PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for EC 6.3.5.5 as complete word(s)

Or try another search

Found 26 characterized proteins with matching descriptions. 8 of these are heteromeric.

Fetched 26 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 26 of these sequences

Found 4 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 2198-2275 amino acids (not heteromeric)

P27708 CAD protein (EC 3.5.2.3; EC 6.3.5.5; EC 2.1.3.2) from Homo sapiens
PYR1_HUMAN / P27708 CAD protein; EC 6.3.5.5; EC 2.1.3.2; EC 3.5.2.3 from Homo sapiens (Human)
P27708 aspartate carbamoyltransferase (EC 2.1.3.2); dihydroorotase (EC 3.5.2.3); carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) from Homo sapiens
PFams: CPSase_sm_chain, GATase, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS, Amidohydro_1, OTCace_N, OTCace
2225 amino acids: PaperBLAST, CDD, Compare to cluster

Q5EI67 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) from Danio rerio
PFams: CPSase_sm_chain, GATase, Peptidase_C26, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, RimK, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, ATPgrasp_Ter, MGS, Amidohydro_1, OTCace_N, OTCace
2226 amino acids: PaperBLAST, CDD, Compare to cluster

CH_122562 protein pyrABCN [Includes glutamine-dependent carbamoyl-phosphate; Aspartate carbamoyltransferase]; EC 2.1.3.2; EC 6.3.5.5 from Emericella nidulans
PFams: CPSase_sm_chain, GATase, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS, OTCace_N, OTCace
2275 amino acids: PaperBLAST, CDD, Compare to cluster

RF|NP_593055.1 carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate carbamoyltransferase Ura1; EC 2.1.3.2; EC 3.5.2.3; EC 6.3.5.5 from Schizosaccharomyces pombe
PFams: CPSase_sm_chain, GATase, CPSase_L_D2, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS, OTCace_N, OTCace
2244 amino acids: PaperBLAST, CDD, Compare to cluster

PYR1_DROME / P05990 CAD protein; Protein rudimentary; EC 6.3.5.5; EC 2.1.3.2; EC 3.5.2.3 from Drosophila melanogaster (Fruit fly)
PFams: CPSase_sm_chain, GATase, Peptidase_C26, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D2, MGS, Amidohydro_1, OTCace_N, OTCace
2224 amino acids: PaperBLAST, CDD, Compare to cluster

P07259 carbamoyl phosphate synthase/aspartate carbamoyltransferase (EC 2.1.3.2; EC 6.3.5.5) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
PYR1_YEAST / P07259 Protein URA2; EC 6.3.5.5; EC 2.1.3.2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: CPSase_sm_chain, GATase, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS, OTCace_N, OTCace
2214 amino acids: PaperBLAST, CDD, Compare to cluster

PYR1_MESAU / P08955 CAD protein; EC 6.3.5.5; EC 2.1.3.2; EC 3.5.2.3 from Mesocricetus auratus (Golden hamster)
P08955 dihydroorotase (EC 3.5.2.3) from Mesocricetus auratus
PFams: CPSase_sm_chain, GATase, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS, Amidohydro_1, OTCace_N, OTCace
2225 amino acids: PaperBLAST, CDD, Compare to cluster

PYR1_CAEEL / Q18990 CAD protein; EC 6.3.5.5; EC 2.1.3.2; EC 3.5.2.3 from Caenorhabditis elegans
PFams: CPSase_sm_chain, GATase, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS, Amidohydro_1, OTCace_N, OTCace
2198 amino acids: PaperBLAST, CDD, Compare to cluster

PYR1_SQUAC / Q91437 CAD protein; EC 6.3.5.5; EC 2.1.3.2; EC 3.5.2.3 from Squalus acanthias (Spiny dogfish)
PFams: CPSase_sm_chain, GATase, CPSase_L_D2, Dala_Dala_lig_C, ATP-grasp, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS, Amidohydro_1, OTCace_N, OTCace
2242 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 1059-1187 amino acids (4/8 heteromeric)

B2G3Q3 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) from Streptococcus thermophilus
PFams: CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, ATP-grasp_3, CPSase_L_D2, GARS_A, ATP-grasp, Dala_Dala_lig_C, MGS
1059 amino acids: PaperBLAST, CDD, Compare to cluster

G4MS82 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) from Magnaporthe oryzae
PFams: CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C
1179 amino acids: PaperBLAST, CDD, Compare to cluster

O50302 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) from Geobacillus stearothermophilus
PFams: CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, ATP-grasp_3, CPSase_L_D2, GARS_A, ATP-grasp, Dala_Dala_lig_C, ATPgrasp_Ter, MGS
1064 amino acids: PaperBLAST, CDD, Compare to cluster

b0033 carbamoyl phosphate synthetase subunit β (EC 6.3.5.5) from Escherichia coli K-12 substr. MG1655
P00968 carbamoyl phosphate synthetase subunit β (EC 6.3.5.5) from Escherichia coli (strain K12)
P00968 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) from Escherichia coli
CH_002132 carbamoyl phosphate synthase, large subunit; EC 6.3.5.5 from Escherichia coli
PFams: CPSase_L_D2, ATP-grasp, CPSase_L_D3, CPSase_L_D2, ATP-grasp_3, ATP-grasp, ATPgrasp_Ter, MGS
Heteromeric, 1073 amino acids: PaperBLAST, CDD, Compare to cluster

Q8RSS3 carbamoyl-phosphate synthase (glutamine-hydrolysing) (subunit 1/2) (EC 6.3.5.5) from Halomonas eurihalina
PFams: CPSase_L_D2, CPSase_L_D3, CPSase_L_D2, ATP-grasp_3, ATP-grasp, Dala_Dala_lig_C, MGS
Heteromeric, 1076 amino acids: PaperBLAST, CDD, Compare to cluster

P03965 carbamoyl phosphate synthetase (EC 6.3.5.5) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CARB_YEAST / P03965 Carbamoyl-phosphate synthase arginine-specific large chain; Arginine-specific carbamoyl-phosphate synthetase, ammonia chain; EC 6.3.5.5 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, ATPgrasp_Ter, MGS
Heteromeric, 1118 amino acids: PaperBLAST, CDD, Compare to cluster

CARB_ARATH / Q42601 Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 6; EC 6.3.5.5 from Arabidopsis thaliana (Mouse-ear cress)
PFams: CPSase_L_D2, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS
1187 amino acids: PaperBLAST, CDD, Compare to cluster

P25994 pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis (strain 168)
PFams: CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, ATP-grasp_3, CPSase_L_D2, GARS_A, ATP-grasp, Dala_Dala_lig_C, ATPgrasp_Ter, MGS
Heteromeric, 1071 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 364-432 amino acids (4/7 heteromeric)

B9V284 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) from Medicago truncatula
PFams: CPSase_sm_chain, GATase, Peptidase_C26
432 amino acids: PaperBLAST, CDD, Compare to cluster

Q8RSS4 carbamoyl-phosphate synthase (glutamine-hydrolysing) (subunit 2/2) (EC 6.3.5.5) from Halomonas eurihalina
PFams: CPSase_sm_chain, GATase, Peptidase_C26
Heteromeric, 381 amino acids: PaperBLAST, CDD, Compare to cluster

CARA_SCHPO / O60060 Carbamoyl-phosphate synthase arginine-specific small chain; CPS-A; Arginine-specific carbamoyl-phosphate synthetase, glutamine chain; EC 6.3.5.5 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
GI|3116139 arginine specific carbamoyl-phosphate synthase subunit Arg5 (predicted) from Schizosaccharomyces pombe
PFams: CPSase_sm_chain, GATase
415 amino acids: PaperBLAST, CDD, Compare to cluster

P07258 carbamoyl phosphate synthetase (EC 6.3.5.5) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CARA_YEAST / P07258 Carbamoyl-phosphate synthase arginine-specific small chain; CPS-A; Arginine-specific carbamoyl-phosphate synthetase, glutamine chain; EC 6.3.5.5 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: CPSase_sm_chain, GATase
Heteromeric, 411 amino acids: PaperBLAST, CDD, Compare to cluster

CARA_ARATH / Q9LVW7 Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 from Arabidopsis thaliana (Mouse-ear cress)
PFams: CPSase_sm_chain, GATase, Peptidase_C26
430 amino acids: PaperBLAST, CDD, Compare to cluster

b0032 carbamoyl phosphate synthetase subunit α (EC 6.3.5.5) from Escherichia coli K-12 substr. MG1655
P0A6F1 carbamoyl phosphate synthetase subunit α (EC 6.3.5.5) from Escherichia coli (strain K12)
PFams: CPSase_sm_chain, GATase, Peptidase_C26
Heteromeric, 382 amino acids: PaperBLAST, CDD, Compare to cluster

P25993 pyrimidine-specific carbamoyl-phosphate synthetase (small subunit, glutaminase subunit) (EC 6.3.5.5) from Bacillus subtilis (strain 168)
PFams: CPSase_sm_chain, GATase
Heteromeric, 364 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 4 1520-1524 amino acids (not heteromeric)

O15829 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) from Leishmania mexicana
PFams: CPSase_sm_chain, GATase, Peptidase_C26, CPSase_L_D2, ATP-grasp, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS
1520 amino acids: PaperBLAST, CDD, Compare to cluster

O15830 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) from Trypanosoma cruzi
PFams: CPSase_sm_chain, GATase, Peptidase_C26, CPSase_L_D2, CPSase_L_D3, ATP-grasp, CPSase_L_D2, Dala_Dala_lig_C
1524 amino acids: PaperBLAST, CDD, Compare to cluster